Sequence Similarity Clusters for the Entities in PDB 1ZYQ

Entity #1 | Chains: P
5'-D(*CP*GP*AP*AP*AP*AP*CP*GP*AP*CP*GP*GP*CP*CP*AP*GP*TP*GP*CP*CP*AP*(DDG))-3' dna, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: T
5'-D(*CP*CP*CP*(8OG)P*CP*TP*GP*GP*CP*AP*CP*TP*GP*GP*CP*CP*GP*TP*CP*GP*TP*TP*TP*TP*CP*G)-3' dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
DNA polymerase protein, length: 698 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 78536
95 % 15 23 2686 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 1.8
PDBFlex
90 % 15 23 2740
70 % 15 23 2784
50 % 15 23 2725
40 % 15 23 2745
30 % 15 23 2719
Entity #4 | Chains: B
Thioredoxin 1 protein, length: 108 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 27 1193
95 % 48 61 434 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 0.8
PDBFlex
90 % 48 62 452
70 % 49 63 478
50 % 57 74 450
40 % 154 207 145
30 % 173 242 130

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures