Sequence Similarity Clusters for the Entities in PDB 1ZQJ

Entity #1 | Chains: T
DNA (5'-D(*CP*AP*TP*TP*AP*GP*AP*A)-3') dna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: P
DNA (5'-D(*TP*CP*TP*AP*AP*TP*G)-3') dna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
PROTEIN (DNA POLYMERASE BETA (E.C.2.7.7.7)) protein, length: 335 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 308 311 101
95 % 378 383 80 Flexibility: Low
Max RMSD: 14.0, Avg RMSD: 2.9
PDBFlex
90 % 378 383 86
70 % 378 383 104
50 % 378 383 133
40 % 378 383 152
30 % 499 506 98

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures