Sequence Similarity Clusters for the Entities in PDB 1ZEA

Entity #1 | Chains: L
monoclonal anti-cholera toxin IGG1 KAPPA antibody, L chain protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 74414
95 % 25 162 179 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 28 172 158
70 % 260 2368 2
50 % 323 3003 2
40 % 323 3003 2
30 % 668 6095 1
Entity #2 | Chains: H
monoclonal anti-cholera toxin IGG1 KAPPA antibody, H chain protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 74415
95 % 1 2 39527 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.9
PDBFlex
90 % 1 2 37632
70 % 318 2903 1
50 % 339 3048 1
40 % 339 3048 1
30 % 669 6095 1
Entity #3 | Chains: A
short synthetic D-amino acid peptide D2 protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures