Sequence Similarity Clusters for the Entities in PDB 1ZBB

Entity #1 | Chains: I
DNA STRAND 1 (ARBITRARY MODEL SEQUENCE) dna, length: 347 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: J
DNA STRAND 2 (ARBITRARY MODEL SEQUENCE) dna, length: 347 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,E,a,e
HISTONE H3 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 64 71 206
95 % 161 180 71 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 1.1
PDBFlex
90 % 166 187 75
70 % 167 188 87
50 % 170 192 116
40 % 170 192 139
30 % 170 192 151
Entity #4 | Chains: B,F,b,f
Histone H4 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 169 191 52
95 % 172 194 63 Flexibility: Low
Max RMSD: 13.3, Avg RMSD: 1.2
PDBFlex
90 % 178 202 68
70 % 178 202 82
50 % 178 202 109
40 % 178 202 131
30 % 178 202 143
Entity #5 | Chains: C,G,c,g
Histone H2A.1 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 78 91 168
95 % 148 176 72 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 0.5
PDBFlex
90 % 157 185 73
70 % 163 193 83
50 % 174 204 105
40 % 174 204 125
30 % 174 204 136
Entity #6 | Chains: D,H,d,h
Histone H2B.1 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 51 54 294
95 % 145 170 77 Flexibility: No
Max RMSD: 9.7, Avg RMSD: 0.5
PDBFlex
90 % 145 170 82
70 % 157 184 91
50 % 157 184 124
40 % 157 184 142
30 % 157 184 154

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures