Sequence Similarity Clusters for the Entities in PDB 1ZBB

Entity #1 | Chains: I
DNA STRAND 1 (ARBITRARY MODEL SEQUENCE) dna, length: 347 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: J
DNA STRAND 2 (ARBITRARY MODEL SEQUENCE) dna, length: 347 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,E,a,e
HISTONE H3 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 64 73 208
95 % 161 192 71 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 1.1
PDBFlex
90 % 166 199 71
70 % 169 202 83
50 % 172 206 111
40 % 172 206 131
30 % 172 206 144
Entity #4 | Chains: B,F,b,f
Histone H4 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 171 205 49
95 % 174 208 60 Flexibility: Low
Max RMSD: 13.3, Avg RMSD: 1.2
PDBFlex
90 % 180 216 64
70 % 180 216 75
50 % 180 216 104
40 % 180 216 124
30 % 180 216 138
Entity #5 | Chains: C,G,c,g
Histone H2A.1 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 78 96 151
95 % 149 189 73 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 0.5
PDBFlex
90 % 158 198 68
70 % 164 206 78
50 % 175 217 102
40 % 175 217 120
30 % 175 217 131
Entity #6 | Chains: D,H,d,h
Histone H2B.1 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 51 54 321
95 % 88 111 152 Flexibility: No
Max RMSD: 9.7, Avg RMSD: 0.5
PDBFlex
90 % 147 184 79
70 % 159 198 87
50 % 159 198 116
40 % 159 198 139
30 % 159 198 152

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures