Sequence Similarity Clusters for the Entities in PDB 1YYP

Entity #1 | Chains: A
DNA polymerase processivity factor protein, length: 290 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 21763
95 % 2 4 17285 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.2
PDBFlex
90 % 2 4 16958
70 % 2 4 15846
50 % 2 4 14303
40 % 2 4 13315
30 % 2 4 12123
Entity #2 | Chains: B
DNA polymerase protein, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 72990
95 % 1 1 60616
90 % 1 1 57112
70 % 1 1 49663
50 % 1 1 42814
40 % 1 1 38658
30 % 1 1 34060

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures