Sequence Similarity Clusters for the Entities in PDB 1YQ3

Entity #1 | Chains: A
Succinate dehydrogenase flavoprotein subunit protein, length: 621 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 13 4348
95 % 6 13 4999 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 6 36 1741
70 % 6 48 1075
50 % 6 48 1114
40 % 6 72 578
30 % 8 83 511
Entity #2 | Chains: B
succinate dehydrogenase Ip subunit protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 13 3971
95 % 6 13 4815 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 6 13 4886
70 % 6 36 1800
50 % 6 48 1117
40 % 6 48 1144
30 % 6 48 1184
Entity #3 | Chains: C
SUCCINATE DEHYDROGENASE CYTOCHROME B, LARGE SUBUNIT protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 50692
95 % 6 13 5174 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 6 13 5222
70 % 6 34 1899
50 % 6 34 1947
40 % 6 34 1990
30 % 6 34 2024
Entity #4 | Chains: D
SUCCINATE DEHYDROGENASE CYTOCHROME B, SMALL SUBUNIT protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 13 4246
95 % 6 13 5308 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 6 13 5357
70 % 6 34 1900
50 % 6 34 1948
40 % 6 34 1991
30 % 6 34 2025

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures