1YNL

Identification of Key residues of the NC6.8 Fab antibody fragment binding to synthetic sweeterners: Crystal structure of NC6.8 co-crystalized with high potency sweetener compound SC45647


Sequence Similarity Clusters for the Entities in PDB 1YNL

Entity #1 | Chains: L
Ig gamma light chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 25167
95 % 22 168 172 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 25 178 160
70 % 216 2488 2
50 % 569 6427 1
40 % 569 6428 1
30 % 577 6475 1
Entity #2 | Chains: H
Ig gamma heavy chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 73413
95 % 1 4 24706 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 2.5
PDBFlex
90 % 1 4 23956
70 % 272 3058 1
50 % 570 6427 1
40 % 570 6428 1
30 % 578 6475 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures