Sequence Similarity Clusters for the Entities in PDB 1YM4

Entity #1 | Chains: A,B,C
Beta-secretase 1 protein, length: 408 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 167 209 78
95 % 309 370 30 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 0.9
PDBFlex
90 % 309 370 32
70 % 290 346 49
50 % 290 346 83
40 % 290 346 98
30 % 290 346 100
Entity #2 | Chains: X,Y,Z
NVP-AMK640 INHIBITOR protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures