Sequence Similarity Clusters for the Entities in PDB 1YM2

Entity #1 | Chains: A,B,C
Beta-secretase 1 protein, length: 402 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 146 243 47
95 % 226 370 31 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 0.9
PDBFlex
90 % 226 370 33
70 % 210 346 51
50 % 210 346 88
40 % 210 346 102
30 % 210 346 102
Entity #2 | Chains: X,Y,Z
NVP-AUR200 INHIBITOR protein, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures