Sequence Similarity Clusters for the Entities in PDB 1YCR

Entity #1 | Chains: A
MDM2 protein, length: 109 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 8099
95 % 64 77 220 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 1.4
PDBFlex
90 % 64 77 230
70 % 74 89 218
50 % 87 109 205
40 % 87 109 225
30 % 87 109 241
Entity #2 | Chains: B
P53 protein, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures