Sequence Similarity Clusters for the Entities in PDB 1YCR

Entity #1 | Chains: A
MDM2 protein, length: 109 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 19 1068
95 % 61 73 228 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 1.4
PDBFlex
90 % 61 73 237
70 % 71 85 242
50 % 84 103 212
40 % 84 103 234
30 % 84 103 244
Entity #2 | Chains: B
P53 protein, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.