Sequence Similarity Clusters for the Entities in PDB 1YAE

Entity #1 | Chains: A,B,C,D,E,F
Glutamate receptor, ionotropic kainate 2 protein, length: 312 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 14298
95 % 1 1 15786 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 1 1 15539
70 % 1 1 14610
50 % 1 1 13223
40 % 1 1 12310
30 % 1 1 11231

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures