Sequence Similarity Clusters for the Entities in PDB 1Y8R

Entity #1 | Chains: A,D
Ubiquitin-like 1 activating enzyme E1A protein, length: 346 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 9425
95 % 5 6 9929 Flexibility: Low
Max RMSD: 4.3, Avg RMSD: 1.6
PDBFlex
90 % 5 6 9844
70 % 5 6 9553
50 % 5 6 8892
40 % 5 6 8521
30 % 5 6 7949
Entity #2 | Chains: B,E
Ubiquitin-like 2 activating enzyme E1B protein, length: 640 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 29254
95 % 4 5 12885 Flexibility: Medium
Max RMSD: 16.0, Avg RMSD: 5.8
PDBFlex
90 % 4 5 12694
70 % 4 5 12056
50 % 4 5 11038
40 % 4 5 10391
30 % 4 5 9600
Entity #3 | Chains: C,F
Ubiquitin-like protein SMT3C protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 9 8228
95 % 5 12 5741 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 1.4
PDBFlex
90 % 5 15 4666
70 % 6 16 4301
50 % 6 16 4199
40 % 6 16 4135
30 % 6 16 4048

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures