Sequence Similarity Clusters for the Entities in PDB 1Y8Q

Entity #1 | Chains: A,C
Ubiquitin-like 1 activating enzyme E1A protein, length: 346 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 11924
95 % 1 6 11553 Flexibility: Low
Max RMSD: 4.3, Avg RMSD: 1.6
PDBFlex
90 % 1 6 11410
70 % 1 6 11158
50 % 1 6 10240
40 % 1 6 9530
30 % 1 6 8820
Entity #2 | Chains: B,D
Ubiquitin-like 2 activating enzyme E1B protein, length: 640 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 29733
95 % 1 5 12403 Flexibility: Medium
Max RMSD: 16.0, Avg RMSD: 5.8
PDBFlex
90 % 1 5 12216
70 % 1 5 11610
50 % 1 5 10615
40 % 1 5 9994
30 % 1 5 9241

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1Y8Q 2 B, D Ubiquitin-like 2 activating enzyme E1B 9606 2.3.2 | Details
2 3KYC 2 B SUMO-activating enzyme subunit 2 9606 2.3.2 | Details
3 6CWY 2 D SUMO-activating enzyme subunit 2 9606 2.3.2 | Details
4 1Y8R 2 B, E Ubiquitin-like 2 activating enzyme E1B 9606 2.3.2 | Details
5 6CWZ 2 D SUMO-activating enzyme subunit 2 9606 2.3.2 | Details