Sequence Similarity Clusters for the Entities in PDB 1Y8Q

Entity #1 | Chains: A,C
Ubiquitin-like 1 activating enzyme E1A protein, length: 346 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 12087
95 % 1 6 11743 Flexibility: Low
Max RMSD: 4.3, Avg RMSD: 1.6
PDBFlex
90 % 1 6 11566
70 % 1 6 11057
50 % 1 6 10166
40 % 1 6 9612
30 % 1 6 8902
Entity #2 | Chains: B,D
Ubiquitin-like 2 activating enzyme E1B protein, length: 640 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 28886
95 % 1 5 12409 Flexibility: Medium
Max RMSD: 16.0, Avg RMSD: 5.8
PDBFlex
90 % 1 5 12231
70 % 1 5 12458
50 % 1 5 10638
40 % 1 5 10011
30 % 1 5 9260

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1Y8Q 2 B, D Ubiquitin-like 2 activating enzyme E1B 9606 2.3.2 | Details
2 1Y8R 2 B, E Ubiquitin-like 2 activating enzyme E1B 9606 2.3.2 | Details