Sequence Similarity Clusters for the Entities in PDB 1Y8Q

Entity #1 | Chains: A,C
Ubiquitin-like 1 activating enzyme E1A protein, length: 346 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 11847
95 % 1 6 11462 Flexibility: Low
Max RMSD: 4.3, Avg RMSD: 1.6
PDBFlex
90 % 1 6 11308
70 % 1 6 11085
50 % 1 6 9990
40 % 1 6 9470
30 % 1 6 8928
Entity #2 | Chains: B,D
Ubiquitin-like 2 activating enzyme E1B protein, length: 640 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 20886
95 % 1 5 12291 Flexibility: Medium
Max RMSD: 16.0, Avg RMSD: 5.8
PDBFlex
90 % 1 5 12118
70 % 1 5 11532
50 % 1 5 10532
40 % 1 5 9924
30 % 1 5 9184

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures