Sequence Similarity Clusters for the Entities in PDB 1Y2J

Entity #1 | Chains: A,B
cAMP-specific 3',5'-cyclic phosphodiesterase 4B protein, length: 398 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 20 1640
95 % 30 30 1387 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 0.8
PDBFlex
90 % 30 30 1419
70 % 78 79 251
50 % 78 79 297
40 % 78 79 313
30 % 79 81 283

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures