Sequence Similarity Clusters for the Entities in PDB 1XXI

Entity #1 | Chains: A,F
DNA polymerase III, delta subunit protein, length: 343 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 8 4096
95 % 8 8 4942 Flexibility: Medium
Max RMSD: 14.8, Avg RMSD: 5.8
PDBFlex
90 % 8 8 5014
70 % 8 8 4956
50 % 8 8 4828
40 % 8 8 4712
30 % 8 8 4571
Entity #2 | Chains: B,C,D,G,H,I
DNA polymerase III subunit gamma protein, length: 368 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 6 1448
95 % 7 7 1598 Flexibility: Medium
Max RMSD: 7.7, Avg RMSD: 4.5
PDBFlex
90 % 7 7 1634
70 % 7 7 1680
50 % 7 7 1730
40 % 7 7 1781
30 % 7 7 1800
Entity #3 | Chains: E,J
DNA polymerase III, delta prime subunit protein, length: 334 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 8 4887
95 % 8 8 5777 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 1.8
PDBFlex
90 % 8 8 5678
70 % 8 8 5751
50 % 8 8 5412
40 % 8 8 5397
30 % 8 8 5044

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures