Sequence Similarity Clusters for the Entities in PDB 1XQ5

Entity #1 | Chains: A,C
Hemoglobin alpha-1 chain protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 55300
95 % 3 4 12568 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 3 4 12396
70 % 20 29 1450
50 % 26 39 1055
40 % 31 44 943
30 % 468 831 11
Entity #2 | Chains: B,D
Hemoglobin beta-2 chain protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 12643
95 % 3 4 12491 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 3 4 12316
70 % 17 26 1598
50 % 433 782 6
40 % 433 782 7
30 % 469 831 11

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures