Sequence Similarity Clusters for the Entities in PDB 1XMY

Entity #1 | Chains: A
cAMP-specific 3',5'-cyclic phosphodiesterase 4B protein, length: 398 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 20 1649
95 % 26 30 1395 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 0.8
PDBFlex
90 % 26 30 1425
70 % 75 81 250
50 % 75 81 277
40 % 75 81 292
30 % 76 83 263
Entity #2 | Chains: B
cAMP-specific 3',5'-cyclic phosphodiesterase 4B protein, length: 398 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 20 1649
95 % 27 30 1395 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 0.8
PDBFlex
90 % 27 30 1425
70 % 76 81 250
50 % 76 81 277
40 % 76 81 292
30 % 77 83 263

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures