Sequence Similarity Clusters for the Entities in PDB 1XF5

Entity #1 | Chains: P,Q
Capsid protein C protein, length: 44 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 10688
95 % 1 4 11933
90 % 1 4 11756
70 % 1 4 11233
50 % 1 4 10292
40 % 1 4 9719
30 % 1 4 9009
Entity #2 | Chains: A,C
Monoclonal antibody 19D9D6 Light chain protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 5307
95 % 45 70 451 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 1.0
PDBFlex
90 % 54 92 313
70 % 1291 2435 2
50 % 3298 6273 1
40 % 3298 6273 1
30 % 3322 6319 1
Entity #3 | Chains: B,D
Monoclonal antibody 19D9D6 Heavy chain protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 5331
95 % 3 7 6084 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.2
PDBFlex
90 % 5 9 4903
70 % 1580 3001 1
50 % 3299 6273 1
40 % 3299 6273 1
30 % 3323 6319 1
Entity #4 | Chains: L,M
Protein L protein, length: 80 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44598
95 % 1 3 11097 Flexibility: Low
Max RMSD: 6.1, Avg RMSD: 1.6
PDBFlex
90 % 1 3 10951
70 % 1 3 10504
50 % 1 3 9718
40 % 1 3 9247
30 % 1 3 8588

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures