Sequence Similarity Clusters for the Entities in PDB 1WRD

Entity #1 | Chains: A
Target of Myb protein 1 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 36946
95 % 1 3 27402
90 % 1 3 27751
70 % 1 3 25099
50 % 1 3 22222
40 % 1 3 21275
30 % 1 3 19044
Entity #2 | Chains: B
Ubiquitin protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 76 393 4
95 % 94 491 6 Flexibility: Low
Max RMSD: 12.4, Avg RMSD: 1.4
PDBFlex
90 % 98 504 6
70 % 107 555 9
50 % 108 570 10
40 % 108 574 12
30 % 112 595 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures