Sequence Similarity Clusters for the Entities in PDB 1WMQ

Entity #1 | Chains: C,D
5'-R(P*UP*UP*UP*AP*GP*UP*U)-3' rna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
Hut operon positive regulatory protein protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 11 1450
95 % 2 11 1946 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.0
PDBFlex
90 % 2 11 1994
70 % 2 11 2037
50 % 2 13 1831
40 % 2 13 1872
30 % 2 13 1900

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures