Sequence Similarity Clusters for the Entities in PDB 1WDD

Entity #1 | Chains: A,E
Ribulose bisphosphate carboxylase large chain protein, length: 477 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 6813
95 % 1 4 5125 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.4
PDBFlex
90 % 1 22 691
70 % 1 45 142
50 % 1 57 137
40 % 1 57 153
30 % 1 57 159
Entity #2 | Chains: S,W
Ribulose bisphosphate carboxylase small chain C protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 8411
95 % 1 3 6808 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 1 3 6818
70 % 1 20 778
50 % 1 21 738
40 % 1 32 372
30 % 1 32 387

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures