Sequence Similarity Clusters for the Entities in PDB 1VR1

Entity #1 | Chains: L
thrombin protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 172 349 53
95 % 43 65 781 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 0.6
PDBFlex
90 % 43 65 824
70 % 45 75 693
50 % 45 75 732
40 % 45 75 754
30 % 45 75 798
Entity #2 | Chains: H
thrombin protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 67794
95 % 177 362 79 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 0.6
PDBFlex
90 % 175 360 84
70 % 178 391 78
50 % 178 391 101
40 % 178 393 121
30 % 1132 1949 6
Entity #3 | Chains: I
Hirudin protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures