Sequence Similarity Clusters for the Entities in PDB 1VQ4

Entity #1 | Chains: 0
23S ribosomal rna rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: G
ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 44 1125
95 % 34 64 986 Flexibility: No
Max RMSD: 3.2, Avg RMSD: 0.4
PDBFlex
90 % 34 64 1027
70 % 34 64 1051
50 % 34 64 1095
40 % 34 64 1118
30 % 34 64 1161
Entity #11 | Chains: H
50S RIBOSOMAL PROTEIN L10E protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 47 1031
95 % 33 47 1414 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 33 47 1441
70 % 33 47 1482
50 % 36 68 1001
40 % 36 72 970
30 % 36 72 1018
Entity #12 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 74 579
95 % 36 74 790 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 74 834
70 % 36 74 868
50 % 36 74 905
40 % 36 74 940
30 % 36 75 971
Entity #13 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 24 2501
95 % 36 68 879 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 36 68 922
70 % 36 68 969
50 % 36 70 978
40 % 36 70 1012
30 % 36 70 1060
Entity #14 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 74 583
95 % 36 74 803 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 36 74 845
70 % 36 74 885
50 % 36 74 917
40 % 36 74 948
30 % 36 74 995
Entity #15 | Chains: M
50S Ribosomal Protein L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 24 2342
95 % 33 47 1416 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 33 47 1443
70 % 35 67 1002
50 % 36 70 972
40 % 36 70 1001
30 % 36 70 1050
Entity #16 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 74 588
95 % 36 74 791 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 36 74 835
70 % 36 74 869
50 % 36 76 875
40 % 36 76 906
30 % 36 76 956
Entity #17 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 68 667
95 % 36 68 899 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 36 68 948
70 % 36 68 980
50 % 36 70 960
40 % 36 70 992
30 % 36 70 1052
Entity #18 | Chains: P
50S ribosomal protein L19E protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 47 1034
95 % 36 68 877 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 36 68 920
70 % 36 68 965
50 % 36 68 1005
40 % 36 70 993
30 % 36 75 978
Entity #19 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 68 655
95 % 36 68 903 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 68 946
70 % 36 68 986
50 % 36 68 1017
40 % 36 68 1053
30 % 36 68 1102
Entity #2 | Chains: 9
5S ribosomal RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 67 678
95 % 36 68 894 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 36 68 940
70 % 36 68 976
50 % 36 68 1012
40 % 36 68 1045
30 % 36 70 1035
Entity #21 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 74 580
95 % 36 74 792 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 36 74 837
70 % 36 74 872
50 % 36 77 868
40 % 36 79 880
30 % 36 79 913
Entity #22 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 74 585
95 % 36 74 804 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 74 846
70 % 36 74 880
50 % 36 74 913
40 % 36 74 949
30 % 36 78 931
Entity #23 | Chains: U
50S ribosomal protein L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 70 626
95 % 34 70 855 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 34 70 888
70 % 34 70 927
50 % 34 70 966
40 % 34 70 998
30 % 34 70 1046
Entity #24 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 74 582
95 % 36 74 798 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 36 74 842
70 % 36 74 879
50 % 36 74 912
40 % 36 74 945
30 % 36 74 992
Entity #25 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 68 656
95 % 36 68 905 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 68 950
70 % 36 68 991
50 % 36 68 1022
40 % 36 70 1011
30 % 36 70 1059
Entity #26 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 64 719
95 % 34 64 982 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 34 64 1023
70 % 34 64 1054
50 % 34 64 1090
40 % 34 64 1111
30 % 34 64 1162
Entity #27 | Chains: Y
50S ribosomal protein L32E protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 63 724
95 % 33 63 1002 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 33 63 1044
70 % 33 63 1068
50 % 33 63 1106
40 % 33 63 1134
30 % 33 63 1175
Entity #28 | Chains: Z
50S ribosomal protein L37Ae protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 20 3343
95 % 20 23 3365 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 20 23 3416
70 % 20 23 3453
50 % 20 23 3411
40 % 20 23 3396
30 % 20 195 245
Entity #29 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 68 662
95 % 36 68 883 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 68 941
70 % 36 68 981
50 % 36 69 981
40 % 36 69 1014
30 % 36 69 1062
Entity #3 | Chains: 4
5'-R(*CP*CP*(5AA)P*(2OP)P*(PO2)P*(DA)P*C*C)-3') rna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #30 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 47 1038
95 % 36 68 886 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 36 68 929
70 % 36 68 975
50 % 36 68 1018
40 % 36 68 1054
30 % 36 68 1103
Entity #31 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 68 649
95 % 36 68 878 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 36 68 921
70 % 36 68 968
50 % 36 68 1007
40 % 36 70 995
30 % 36 70 1041
Entity #32 | Chains: I
50S RIBOSOMAL PROTEIN L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 30 42 1161
95 % 30 42 1566 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 30 42 1590
70 % 30 42 1641
50 % 31 46 1457
40 % 31 46 1498
30 % 31 46 1531
Entity #4 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 47 1035
95 % 36 68 875 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 36 68 924
70 % 36 68 970
50 % 36 70 969
40 % 36 245 197
30 % 36 245 208
Entity #5 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 67 679
95 % 36 74 795 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 36 74 840
70 % 36 74 882
50 % 36 74 916
40 % 36 76 921
30 % 36 74 994
Entity #6 | Chains: C
50S ribosomal protein L4E protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 44 1129
95 % 36 74 800 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 36 74 843
70 % 36 74 881
50 % 36 74 915
40 % 36 76 920
30 % 37 78 932
Entity #7 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 74 591
95 % 36 74 789 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 36 74 832
70 % 36 74 878
50 % 36 74 903
40 % 36 76 915
30 % 36 76 962
Entity #8 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 68 660
95 % 36 68 881 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 68 925
70 % 36 68 971
50 % 36 68 1009
40 % 36 252 192
30 % 36 253 199
Entity #9 | Chains: F
50S ribosomal protein L7AE protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 47 1039
95 % 33 47 1428 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 36 68 953
70 % 36 68 992
50 % 53 111 416
40 % 53 111 434
30 % 53 111 454

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures