Sequence Similarity Clusters for the Entities in PDB 1VPP

Entity #1 | Chains: V,W
PROTEIN (VASCULAR ENDOTHELIAL GROWTH FACTOR) protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 22 777
95 % 8 31 666 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 0.9
PDBFlex
90 % 8 31 697
70 % 10 37 610
50 % 10 40 636
40 % 10 43 631
30 % 10 47 612
Entity #2 | Chains: X,Y
PROTEIN (PEPTIDE V108) protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 41310
95 % 1 1 41014
90 % 1 1 39082
70 % 1 1 34563
50 % 1 1 29999
40 % 1 1 27257
30 % 1 1 24192

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures