Sequence Similarity Clusters for the Entities in PDB 1VKF

Entity #1 | Chains: A,B,C,D
glycerol uptake operon antiterminator-related protein protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 24605
95 % 1 1 21602 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 1 1 21075
70 % 1 1 19352
50 % 1 1 17173
40 % 1 1 15815
30 % 1 1 14204

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures