Sequence Similarity Clusters for the Entities in PDB 1V54

Entity #1 | Chains: A,N
Cytochrome c oxidase polypeptide I protein, length: 514 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 56 374
95 % 16 58 491 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 16 59 513
70 % 16 59 543
50 % 16 79 443
40 % 16 79 464
30 % 16 79 482
Entity #10 | Chains: J,W
Cytochrome c oxidase polypeptide VIIa-heart protein, length: 59 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 55 393
95 % 16 57 510 Flexibility: No
Max RMSD: 2.1, Avg RMSD: 0.4
PDBFlex
90 % 16 57 533
70 % 16 57 574
50 % 16 58 598
40 % 16 58 631
30 % 16 58 660
Entity #11 | Chains: K,X
Cytochrome c oxidase polypeptide VIIb protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 52 426
95 % 16 52 570 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 16 52 589
70 % 16 52 627
50 % 16 52 667
40 % 16 52 693
30 % 16 52 730
Entity #12 | Chains: L,Y
Cytochrome c oxidase polypeptide VIIc protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 57 372
95 % 16 57 507 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 16 57 531
70 % 16 58 569
50 % 16 58 602
40 % 16 58 637
30 % 16 58 666
Entity #13 | Chains: M,Z
Cytochrome c oxidase polypeptide VIII-heart protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 57 379
95 % 16 57 512 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 16 57 536
70 % 16 57 575
50 % 16 57 608
40 % 16 58 628
30 % 16 58 657
Entity #2 | Chains: B,O
Cytochrome c oxidase polypeptide II protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 56 376
95 % 16 58 495 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 16 58 521
70 % 16 59 552
50 % 16 59 588
40 % 16 61 602
30 % 16 76 495
Entity #3 | Chains: C,P
Cytochrome c oxidase polypeptide III protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 48 454
95 % 16 58 494 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 16 58 519
70 % 16 59 546
50 % 16 59 585
40 % 16 65 564
30 % 16 65 588
Entity #4 | Chains: D,Q
Cytochrome c oxidase subunit IV isoform 1 protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 55 396
95 % 16 57 514 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 0.7
PDBFlex
90 % 16 57 538
70 % 16 58 570
50 % 16 58 605
40 % 16 58 640
30 % 16 58 670
Entity #5 | Chains: E,R
Cytochrome c oxidase polypeptide Va protein, length: 109 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 57 375
95 % 16 58 502 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 16 58 528
70 % 16 58 567
50 % 16 58 604
40 % 16 58 639
30 % 16 58 668
Entity #6 | Chains: F,S
Cytochrome c oxidase polypeptide Vb protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 55 391
95 % 16 57 508 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.7
PDBFlex
90 % 16 57 532
70 % 16 58 572
50 % 16 58 600
40 % 16 58 634
30 % 16 58 671
Entity #7 | Chains: G,T
Cytochrome c oxidase polypeptide VIa-heart protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 55 399
95 % 16 57 516 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 0.9
PDBFlex
90 % 16 57 539
70 % 16 57 577
50 % 16 57 611
40 % 16 57 646
30 % 16 57 679
Entity #8 | Chains: H,U
Cytochrome c oxidase polypeptide VIb protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 58 365
95 % 16 58 490 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 16 58 517
70 % 16 59 556
50 % 16 59 592
40 % 16 59 622
30 % 16 59 650
Entity #9 | Chains: I,V
Cytochrome c oxidase polypeptide VIc protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 56 380
95 % 16 58 493 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.6
PDBFlex
90 % 16 58 518
70 % 16 59 555
50 % 16 59 591
40 % 16 59 621
30 % 16 59 649

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures