Sequence Similarity Clusters for the Entities in PDB 1UMD

Entity #1 | Chains: A,C
2-oxo acid dehydrogenase alpha subunit protein, length: 367 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 10580
95 % 1 4 11480 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.4
PDBFlex
90 % 1 4 11553
70 % 1 4 11026
50 % 1 4 9661
40 % 1 9 2695
30 % 21 33 1403
Entity #2 | Chains: B,D
2-oxo acid dehydrogenase beta subunit protein, length: 324 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 10581
95 % 1 4 11481 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 1 4 11554
70 % 1 4 11027
50 % 1 11 2254
40 % 21 35 1251
30 % 21 44 742

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures