Sequence Similarity Clusters for the Entities in PDB 1UKV

Entity #1 | Chains: G
Secretory pathway GDP dissociation inhibitor protein, length: 453 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 12510
95 % 2 5 12035 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.2
PDBFlex
90 % 2 5 12300
70 % 2 5 11703
50 % 3 10 5127
40 % 3 10 4998
30 % 3 10 4798
Entity #2 | Chains: Y
GTP-binding protein YPT1 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 18469
95 % 2 3 14804 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.6
PDBFlex
90 % 2 3 14583
70 % 2 24 1388
50 % 6 109 256
40 % 13 166 176
30 % 82 637 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1R2Q 1 A Ras-related protein Rab-5A GTPase domain 9606
2 1WMS 1 A, B Ras-related protein Rab-9A C-terminal truncated 9606
3 2Y8E 1 A, B RAB-PROTEIN 6 RESIDUES 1-177 7227
4 1X3S 1 A Ras-related protein Rab-18 GTPase domain 9606
5 1KY3 1 A GTP-BINDING PROTEIN YPT7P GTPASE DOMAIN 4932
6 1Z0J 1 A Ras-related protein Rab-22A 10090
7 2BCG 2 Y GTP-binding protein YPT1 YPT1 4932
8 4RKF 1 A, B Ras-related protein Rab-3 GTPase domain (UNP Residues 1-188) 7227
9 2GF9 1 A Ras-related protein Rab-3D residues 20-189 9606
10 4LHW 1 A, B, C, D, E Ras-related protein Rab-8A unp residues 6-176 9606
11 6IF3 2 B Ras-related protein Rab-35 9606
12 1N6H 1 A Ras-related protein Rab-5A GTPASE DOMAIN 9606
13 1UKV 2 Y GTP-binding protein YPT1 4932
14 2A5J 1 A Ras-related protein Rab-2B 9606
15 1N6K 1 A Ras-related protein Rab-5A GTPASE DOMAIN 9606
16 1N6R 1 A Ras-related protein Rab-5A GTPASE DOMAIN 9606
17 1N6P 1 A Ras-related protein Rab-5A GTPASE DOMAIN 9606
18 2F9L 1 A RAB11B, member RAS oncogene family GTPase domain, residues 8 to 205 9606 3.6.5.2 | Details
19 2WWX 1 A RAS-RELATED PROTEIN RAB-1 GTPASE DOMAIN, RESIDUES 4-178 9606
20 1N6I 1 A Ras-related protein Rab-5A GTPASE DOMAIN 9606
21 1N6L 1 A Ras-related protein Rab-5A GTPASE DOMAIN 9606
22 1N6N 1 A Ras-related protein Rab-5A GTPASE DOMAIN 9606
23 2BME 1 A, B, C, D RAS-RELATED PROTEIN RAB4A NUCLEOTIDE-BINDING DOMAIN, RESIDUES 1-184 9606 3.6.5.2 | Details
24 3NKV 1 A, B Ras-related protein Rab-1B Rab1b-AMP 9606
25 1KY2 1 A GTP-BINDING PROTEIN YPT7P GTPASE DOMAIN 4932
26 3RWO 1 A, B GTP-binding protein YPT32/YPT11 4932
27 1S8F 1 A, B Ras-related protein Rab-9A C-terminal truncation 9612
28 2BMD 1 A RAS-RELATED PROTEIN RAB4A NUCLEOTIDE-BINDING DOMAIN, RESIDUES 1-184 9606 3.6.5.2 | Details
29 1OIX 1 A RAS-RELATED PROTEIN RAB-11A DELETION MUTANT LACKING THE 43 C-TERMINAL RESIDUES RESIDUES 1-173 9606
30 3SFV 1 A Ras-related protein Rab-1A residues 1-176 9606
31 2HEI 1 A, B Ras-related protein Rab-5B 9606
32 1Z07 1 A Ras-related protein Rab-5C GTPase domain 10090
33 1N6O 1 A Ras-related protein Rab-5A GTPASE DOMAIN 9606
34 2FFQ 1 A Ras-related protein Rab-6B 9606 3.6.1 | Details
35 2D7C 1 A, B Ras-related protein Rab-11A residues 7-173 9606
36 1Z08 1 A, B, C, D Ras-related protein Rab-21 GTPase domain 9606
37 2E9S 1 A, B, C Ras-related protein Rab-6B residues in database 13-174 9606
38 1Z06 1 A Ras-related protein Rab-33B 10090
39 1HUQ 1 A RAB5C GTPASE DOMAIN 10090
40 3TSO 1 A, B Ras-related protein Rab-25 UNP residues 7-180 9606
41 6EKK 2 C, D Ras-related protein Rab-35 9606
42 3JZA 1 A Ras-related protein Rab-1B UNP residues 3-174 9606
43 4PHG 1 A GTP-binding protein YPT7 UNP residues 1-182 4932
44 2F9M 1 A RAB11B, member RAS oncogene family GTPase domain, residues 8 to 205 9606 3.6.5.2 | Details
45 1YZL 1 A Ras-related protein Rab-9A 10090
46 2GIL 1 A, B, C, D Ras-related protein Rab-6A Rab6aNd12Cd33 (residues 12-173) 9606
47 1VG1 1 A Ras-related protein Rab-7 Gtpase Domain 10116
48 3BFK 1 A, B, C, D, E Small GTPase Rab11 Residues 6-185 5833 3.6.5.2 | Details
49 2HV8 1 A, B, C Ras-related protein Rab-11A GTPase domain 9606
50 4RKE 1 A GH01619p GTPase domain (UNP Residues 1-172) 7227
51 1YZQ 1 A small GTP binding protein RAB6 isoform 9606
52 1YVD 1 A Ras-related protein Rab-22A 10090
53 1YU9 1 A GTP-binding protein GTPase domain 9606
54 1YZK 1 A Ras-related protein Rab-11A 9606
55 4C4P 1 A RAS-RELATED PROTEIN RAB-11A RESIDUES 1-173 9606
56 4PHF 1 A GTP-binding protein YPT7 UNP residues 1-182 4932
57 3DZ8 1 A Ras-related protein Rab-3B UNP residues 18-190 9606
58 3RAB 1 A PROTEIN (RAB3A) GTPASE DOMAIN 10116
59 4LHV 1 A, B, C, D, E Ras-related protein Rab-8A unp residues 6-176 9606
60 5JCZ 1 A, D, I Ras-related protein Rab-11A 9606
61 2RHD 1 A Small GTP binding protein rab1a Residues 1-174 5807
62 3RWM 1 B GTP-binding protein YPT32/YPT11 4932
63 5LEF 1 A, B Ras-related protein Rab-6A 9606
64 2FU5 2 C, D Ras-related protein Rab-8A residues 1-183 10090
65 3MJH 1 A, C Ras-related protein Rab-5A residues 16-183 9606 3.6.5.2 | Details
66 1Z0K 1 A, C GTP-binding protein 9606
67 1OIV 1 A, B RAS-RELATED PROTEIN RAB-11A DELETION MUTANT LACKING THE 43 C-TERMINAL RESIDUES RESIDUES 1-173 9606
68 3QBT 1 A, C, E, G Ras-related protein Rab-8A unp residues 6-176 9606
69 2G6B 1 A Ras-related protein Rab-26 residues 56-233 9606
70 1YZN 1 A GTP-binding protein YPT1 4932
71 4Z8Y 1 A, B Ras-related protein SEC4 4932
72 2OT3 2 B Ras-related protein Rab-21 residues 16-183 9606
73 5Z2M 2 A, C Ras-related protein Rab-7a 10090
74 1G16 1 A, B, C, D RAS-RELATED PROTEIN SEC4 RESIDUES 18-187 4932
75 4LX0 1 A, C Ras-related protein Rab-11A Dilute domain residues 1456-1848 9606
76 1YZT 1 A, B Ras-related protein Rab-21 9606
77 6O62 1 A Ras-related protein SEC4 5476
78 1Z0D 1 A, C Ras-related protein Rab-5C GTPase domain 10090
79 3TKL 1 A Ras-related protein Rab-1A UNP residues 1-191 9606
80 2EW1 1 A Ras-related protein Rab-30 9606
81 2EFH 2 B, D Small GTP-binding protein-like GTPase domain 3702
82 1Z0F 1 A RAB14, member RAS oncogene family 9606
83 2HUP 1 A, B RAS-related protein RAB-43 9606
84 2EFC 2 B, D Small GTP-binding protein-like GTPase domain 3702
85 5SZH 2 B Ras-related protein Rab-1B 9606
86 2P5S 1 A, B RAS and EF-hand domain containing residues 533-712 9606
87 4G01 2 B Ras-related protein RABF2b small GTPase, UNP residues 1-179 3702
88 2EFE 2 B, D Small GTP-binding protein-like GTPase domain 3702
89 1Z0A 1 A, B, C, D Ras-related protein Rab-2A 9606
90 4DRZ 1 A Ras-related protein Rab-14 UNP residues 1-177 9606
91 6IF2 1 B Ras-related protein Rab-35 9606
92 3TW8 2 B, D Ras-related protein Rab-35 UNP residues 1-180 9606
93 2OCB 1 A Ras-related protein Rab-9B 9606
94 2O52 1 A, B Ras-related protein Rab-4B 9606
95 1TU4 1 A, B, C, D Ras-related protein Rab-5A GTP binding domain 9606
96 5UB8 1 A Likely rab family GTP-binding protein 5476
97 1G17 1 A, B RAS-RELATED PROTEIN SEC4 RESIDUES 18-187 4932
98 2G77 2 B Ras-related protein Rab-33B 10090
99 2IL1 1 A Rab12 9606
100 2OIL 1 A Ras-related protein Rab-25 9606
101 3CPJ 2 B GTP-binding protein YPT31/YPT8 4932
102 1OIW 1 A RAS-RELATED PROTEIN RAB-11A DELETION MUTANT LACKING THE 43 C-TERMINAL RESIDUES RESIDUES 1-173 9606
103 4PHH 1 A, B, C, D GTP-binding protein YPT7 UNP residues 1-182 4932
104 1D5C 1 A RAB6 GTPASE 5833
105 1TU3 1 A, B, C, D, E Ras-related protein Rab-5A 9606
106 2FE4 1 A Ras-related protein Rab-6B 9606 3.6.1 | Details
107 2GZH 1 A Ras-related protein Rab-11A G protein domain 9606 3.6.5.2 | Details
108 1Z0I 1 A Ras-related protein Rab-21 9606
109 1VG9 2 B, D, F, H Ras-related protein Rab-7 GTPase domain 10116
110 1YZU 1 A, B Ras-related protein Rab-21 9606
111 3TNF 1 A Ras-related protein Rab-8A unp residues 6-176 9606
112 2FOL 1 A Ras-related protein Rab-1A 9606
113 2GZD 1 A, B Ras-related protein Rab-11A G protein domain 9606 3.6.5.2 | Details
114 5EZ5 1 A, B Ras-related protein Rab-11A UNP residues 8-175 9606
115 5XR6 1 A, B Ras-related protein RABA1a UNP residues 10-182 3702
116 4OJK 1 A, B Ras-related protein Rab-11B 9606 3.6.5.2 | Details
117 5O74 2 B, D, F, H, J, L Ras-related protein Rab-1B 9606
118 4D0G 1 A RAS-RELATED PROTEIN RAB-14 RESIDUES 8-180 9606
119 4UJ5 1 A, B RAS-RELATED PROTEIN RAB-11A GTPASE DOMAIN, RESIDUES 6-186 9606
120 5XR4 1 A, B Ras-related protein RABA1a UNP residues 10-182 3702
121 5XR7 1 A, B Ras-related protein RABA1a the 84th Q matched to K and two amino acids were missing UNP residues 10-182 3702
122 5C46 2 F Ras-related protein Rab-11A 9606
123 1ZBD 1 A RABPHILIN-3A 19-217 10116
124 4LWZ 1 A, C Ras-related protein Rab-11A Dilute domain residues 1456-1848 9606
125 2FG5 1 A Ras-related protein Rab-31 residues 2-174 9606
126 4I1O 1 A, C, E, G Ras-related protein Rab-1B UNP residues 3-174 9606
127 5SZJ 1 A Ras-related protein Rab-10 9606
128 5SZK 2 B Ras-related protein Rab-1B 9606
129 4JVS 2 B Ras-related protein Rab-1A UNP residues 1-177 9606
130 4UJ3 1 A, D, G, J, M, P, S, V RAS-RELATED PROTEIN RAB-11A GTPASE DOMAIN 9606
131 4FMC 2 B, D Ras-related protein Rab-1A 9606
132 3CPH 2 A Ras-related protein SEC4 4932
133 4D0L 2 B, D, F RAS-RELATED PROTEIN RAB-11A 9606 3.6.5.2 | Details
134 3L0I 2 B, D Ras-related protein Rab-1A small GTPase domain, residues 1-177 9606
135 4FMD 2 B, D Ras-related protein Rab-1A 9606
136 4FMD 3 F Ras-related protein Rab-1A 9606
137 5SZI 1 A Ras-related protein Rab-8A 9606
138 5LPN 1 A, C Ras-related protein Rab-10 9606
139 2EQB 1 A Ras-related protein SEC4 residues 19-187 4932
140 4HLQ 2 B, D, F, H, J Ras-related protein Rab-1B 9606
141 4KYI 2 B, D, F, H Ras-related protein Rab-5C unp Residues 18-182 9606
142 6DJL 1 A, F, G, H Ras-related protein Rab-11A 9606
143 4ZDW 1 A Ras-related protein SEC4 4932
144 4FMB 2 B, D, F Ras-related protein Rab-1A 9606
145 4IRU 2 B, D, F Ras-related protein Rab-1A 9606 3.6.5.2 | Details
146 5FBR 2 B Ras-related protein Rab-11A 9606
147 5EUQ 1 B Ras-related protein Rab-11A 9606
148 3CWZ 1 A Ras-related protein Rab-6A unp residues 8-195 9606
149 5FBV 2 B Ras-related protein Rab-11A 9606
150 4LHX 1 A, B Ras-related protein Rab-8A unp residues 1-184 9606
151 5C4G 1 B Ras-related protein Rab-11A 9606
152 4LI0 1 A, B Ras-related protein Rab-8A unp residues 1-184 9606
153 2OCY 2 C Ras-related protein SEC4 residues 18-187 4932
154 5FBL 2 B Ras-related protein Rab-11A 9606
155 5FBW 2 B Ras-related protein Rab-11A 9606
156 4FME 2 B, E Ras-related protein Rab-1A 9606
157 4LHZ 1 A, B Ras-related protein Rab-8A unp residues 1-184 9606
158 6IXV 2 E, F, G, H Ras-related protein Rab-11A 9606
159 4LHY 1 A, B Ras-related protein Rab-8A unp residues 1-184 9606
160 2EFD 2 B, D Small GTP-binding protein-like GTPase domain 3702
161 5FBQ 2 B Ras-related protein Rab-11A 9606
162 3CUE 5 F, L, R, X GTP-binding protein YPT1 559292
163 4UJ4 1 A, D, G, J Ras-related protein Rab-11A GTPASE DOMAIN, RESIDUES 4-186 9606
164 4Q9U 2 B, F Ras-related protein Rab-5A UNP residues 15-184 9606
165 4D0M 2 B, D, H, J, N, P, R, T, X, Z, d, h RAS-RELATED PROTEIN RAB-11A 9606 3.6.5.2 | Details
166 5YOZ 1 A Rab5a 5661