Sequence Similarity Clusters for the Entities in PDB 1UKV

Entity #1 | Chains: G
Secretory pathway GDP dissociation inhibitor protein, length: 453 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 12510
95 % 2 5 12035 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.2
PDBFlex
90 % 2 5 12300
70 % 2 5 11703
50 % 3 10 5127
40 % 3 10 4998
30 % 3 10 4798
Entity #2 | Chains: Y
GTP-binding protein YPT1 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 18469
95 % 2 3 14804 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.6
PDBFlex
90 % 2 3 14583
70 % 2 24 1388
50 % 6 109 256
40 % 13 166 176
30 % 82 637 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1D5T 1 A GUANINE NUCLEOTIDE DISSOCIATION INHIBITOR 9913
2 2BCG 1 G Secretory pathway GDP dissociation inhibitor RabGDI 4932
3 1UKV 1 G Secretory pathway GDP dissociation inhibitor 4932
4 3P1W 1 A RabGDI protein 5833
5 1GND 1 A GUANINE NUCLEOTIDE DISSOCIATION INHIBITOR ALPHA-ISOFORM 9913
6 1LV0 1 A RAB GDP disossociation inhibitor alpha 9913
7 3CPI 1 G, H Rab GDP-dissociation inhibitor 4932
8 3CPJ 1 G Rab GDP-dissociation inhibitor 4932
9 6C87 1 A, B, C, D Rab GDP dissociation inhibitor alpha NafoA.19251.a.B1 5763
10 3CPH 1 G, H Rab GDP-dissociation inhibitor 4932