Sequence Similarity Clusters for the Entities in PDB 1UKV

Entity #1 | Chains: G
Secretory pathway GDP dissociation inhibitor protein, length: 453 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 12451
95 % 2 5 12362 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.2
PDBFlex
90 % 2 5 12232
70 % 2 5 11630
50 % 3 10 5024
40 % 3 10 4895
30 % 3 10 4694
Entity #2 | Chains: Y
GTP-binding protein YPT1 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 18239
95 % 2 3 13723 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.6
PDBFlex
90 % 2 3 14327
70 % 2 24 1411
50 % 6 74 430
40 % 13 131 227
30 % 74 584 25

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures