Sequence Similarity Clusters for the Entities in PDB 1UBP

Entity #1 | Chains: A
UREASE protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 9 9486
95 % 12 20 3880 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.1
PDBFlex
90 % 12 20 4071
70 % 14 51 1397
50 % 14 53 1186
40 % 14 53 1211
30 % 14 53 1254
Entity #2 | Chains: B
UREASE protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 20 3221
95 % 12 20 3901 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 12 20 3960
70 % 12 20 3941
50 % 12 20 3884
40 % 12 20 3869
30 % 12 20 3766
Entity #3 | Chains: C
UREASE protein, length: 570 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 8 12608
95 % 12 20 4115 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.4
PDBFlex
90 % 12 20 4175
70 % 12 20 4146
50 % 14 56 1039
40 % 14 56 1054
30 % 14 56 1102

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures