Sequence Similarity Clusters for the Entities in PDB 1U8N

Entity #1 | Chains: A
ANTIBODY 2F5 (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 33 1501
95 % 29 41 1553 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.7
PDBFlex
90 % 29 41 1588
70 % 1215 2290 2
50 % 1522 2908 2
40 % 1522 2908 2
30 % 3103 5899 1
Entity #2 | Chains: B
ANTIBODY 2F5 (HEAVY CHAIN) protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 12 6381
95 % 29 41 1563 Flexibility: Low
Max RMSD: 5.0, Avg RMSD: 0.8
PDBFlex
90 % 29 41 1597
70 % 1481 2805 1
50 % 1562 2949 1
40 % 1562 2949 1
30 % 3104 5899 1
Entity #3 | Chains: C
GP41 PEPTIDE protein, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures