Sequence Similarity Clusters for the Entities in PDB 1U8J

Entity #1 | Chains: A
ANTIBODY 2F5 (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 33 1501
95 % 23 41 1553 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.7
PDBFlex
90 % 23 41 1588
70 % 1001 2290 2
50 % 1267 2908 2
40 % 1267 2908 2
30 % 2584 5899 1
Entity #2 | Chains: B
ANTIBODY 2F5 (HEAVY CHAIN) protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 12 6381
95 % 23 41 1563 Flexibility: Low
Max RMSD: 5.0, Avg RMSD: 0.8
PDBFlex
90 % 23 41 1597
70 % 1230 2805 1
50 % 1303 2949 1
40 % 1303 2949 1
30 % 2585 5899 1
Entity #3 | Chains: C
GP41 PEPTIDE protein, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1U8I 2 B ANTIBODY 2F5 (HEAVY CHAIN) 9606
2 1U8H 2 B ANTIBODY 2F5 (HEAVY CHAIN) 9606
3 1U95 2 B ANTIBODY 2F5 (HEAVY CHAIN) 9606
4 1U91 2 B ANTIBODY 2F5 (HEAVY CHAIN) 9606
5 1U8Q 2 B ANTIBODY 2F5 (HEAVY CHAIN) 9606
6 1U8J 2 B ANTIBODY 2F5 (HEAVY CHAIN) 9606
7 1U8M 2 B ANTIBODY 2F5 (HEAVY CHAIN) 9606
8 1U8N 2 B ANTIBODY 2F5 (HEAVY CHAIN) 9606
9 1U93 2 B ANTIBODY 2F5 (HEAVY CHAIN) 9606
10 1U8L 2 B ANTIBODY 2F5 (HEAVY CHAIN) 9606
11 1U8O 2 B ANTIBODY 2F5 (HEAVY CHAIN) 9606
12 1U8P 2 B ANTIBODY 2F5 (HEAVY CHAIN) 9606