Sequence Similarity Clusters for the Entities in PDB 1U8J

Entity #1 | Chains: A
ANTIBODY 2F5 (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 33 1501
95 % 23 41 1553 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.7
PDBFlex
90 % 23 41 1588
70 % 1001 2290 2
50 % 1267 2908 2
40 % 1267 2908 2
30 % 2584 5899 1
Entity #2 | Chains: B
ANTIBODY 2F5 (HEAVY CHAIN) protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 12 6381
95 % 23 41 1563 Flexibility: Low
Max RMSD: 5.0, Avg RMSD: 0.8
PDBFlex
90 % 23 41 1597
70 % 1230 2805 1
50 % 1303 2949 1
40 % 1303 2949 1
30 % 2585 5899 1
Entity #3 | Chains: C
GP41 PEPTIDE protein, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3IDG 1 A 2F5 Fab light chain 9606
2 3DRQ 1 A 2F5 Fab' light chain 9606
3 3D0V 1 A 2F5 Fab heavy chain 9606
4 2F5B 1 L PROTEIN (ANTIBODY 2F5 (LIGHT CHAIN)) FAB' 9606
5 1U8I 1 A ANTIBODY 2F5 (LIGHT CHAIN) 9606
6 3IDI 1 A 2F5 Fab light chain 9606
7 1U8H 1 A ANTIBODY 2F5 (LIGHT CHAIN) 9606
8 2F5A 1 L PROTEIN (ANTIBODY 2F5 (LIGHT CHAIN)) FAB' 9606
9 2PR4 1 L nmAb 2F5 Fab' Heavy Chain 9606
10 1U95 1 A ANTIBODY 2F5 (LIGHT CHAIN) 9606
11 3IDN 1 A 2F5 Fab light chain 9606
12 1U92 1 A ANTIBODY 2F5 (LIGHT CHAIN) 9606
13 1U91 1 A ANTIBODY 2F5 (LIGHT CHAIN) 9606
14 1U8Q 1 A ANTIBODY 2F5 (LIGHT CHAIN) 9606
15 3IDJ 1 A 2F5 Fab light chain 9606
16 3IDM 1 A 2F5 Fab light chain 9606
17 1U8J 1 A ANTIBODY 2F5 (LIGHT CHAIN) 9606
18 3D0L 1 A 2F5 heavy chain 9606
19 2P8L 1 A nmAb 2F5, light chain 9606
20 1U8M 1 A ANTIBODY 2F5 (LIGHT CHAIN) 9606
21 1U8N 1 A ANTIBODY 2F5 (LIGHT CHAIN) 9606
22 1U93 1 A ANTIBODY 2F5 (LIGHT CHAIN) 9606
23 2PW2 1 A 2F5 Fab' heavy chain 9606
24 2PW1 1 A 2F5 Fab fragment heavy chain 9606
25 1U8L 1 A ANTIBODY 2F5 (LIGHT CHAIN) 9606
26 2P8M 1 A nmAb 2F5, light chain 9606
27 2P8P 1 A nmAb 2F5, light chain 9606
28 1U8O 1 A ANTIBODY 2F5 (LIGHT CHAIN) 9606
29 3DRT 1 A 2F5 Fab' light chain 9606
30 1U8P 1 A ANTIBODY 2F5 (LIGHT CHAIN) 9606
31 3BQU 1 A 2F5 Fab' light chain 9606
32 3EGS 1 A 2F5 Fab' light chain 9606
33 3DRO 1 A 2F5 Fab light chain 9606