1U8J

Crystal structure of the HIV-1 Cross Neutralizing Monoclonal Antibody 2F5 in complex with gp41 Peptide ELDKWAG


Sequence Similarity Clusters for the Entities in PDB 1U8J

Entity #1 | Chains: A
ANTIBODY 2F5 (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 33 1897
95 % 23 41 1846
90 % 23 41 1888
70 % 1149 2743 2
50 % 2979 7105 1
40 % 3009 7173 1
30 % 3009 7174 1
Entity #2 | Chains: B
ANTIBODY 2F5 (HEAVY CHAIN) protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 12 7349
95 % 23 41 1845
90 % 23 41 1887
70 % 1434 3408 1
50 % 2980 7105 1
40 % 3010 7173 1
30 % 3010 7174 1
Entity #3 | Chains: C
GP41 PEPTIDE protein, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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