Sequence Similarity Clusters for the Entities in PDB 1U8J

Entity #1 | Chains: A
ANTIBODY 2F5 (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 33 1492
95 % 23 41 1549 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.7
PDBFlex
90 % 23 41 1588
70 % 996 2273 2
50 % 1260 2886 2
40 % 1260 2886 2
30 % 2569 5855 1
Entity #2 | Chains: B
ANTIBODY 2F5 (HEAVY CHAIN) protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 12 6309
95 % 23 41 1553 Flexibility: Low
Max RMSD: 5.0, Avg RMSD: 0.8
PDBFlex
90 % 23 41 1586
70 % 1222 2784 1
50 % 1295 2927 1
40 % 1295 2927 1
30 % 2570 5855 1
Entity #3 | Chains: C
GP41 PEPTIDE protein, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures