Sequence Similarity Clusters for the Entities in PDB 1TQE

Entity #1 | Chains: C,E
MEF2 binding site of nur77 promoter dna, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D,F
MEF2 binding site of nur77 promoter dna, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: P,Q,R,S
Myocyte-specific enhancer factor 2B protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 6267
95 % 3 3 7381 Flexibility: Low
Max RMSD: 9.4, Avg RMSD: 2.5
PDBFlex
90 % 10 11 1551
70 % 9 10 1801
50 % 9 10 1858
40 % 9 10 1856
30 % 9 10 1886
Entity #4 | Chains: X,Y
Histone deacetylase 9 protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 52005
95 % 1 1 34924 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 1 33452
70 % 1 1 29887
50 % 1 1 26124
40 % 1 1 23790
30 % 1 1 21252

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures