Sequence Similarity Clusters for the Entities in PDB 1TN6

Entity #1 | Chains: A
Protein farnesyltransferase alpha subunit protein, length: 382 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 14 5268
95 % 5 14 6007 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 5 56 529
70 % 5 56 568
50 % 5 56 607
40 % 5 56 631
30 % 5 56 665
Entity #2 | Chains: B
Protein farnesyltransferase beta subunit protein, length: 437 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 11 7138
95 % 5 56 1136 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.7
PDBFlex
90 % 5 56 1162
70 % 5 56 1194
50 % 5 56 1238
40 % 5 56 1272
30 % 5 56 1314
Entity #3 | Chains: C
peptide derived from the C-terminus of Rap2a protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures