Sequence Similarity Clusters for the Entities in PDB 1TMQ

Entity #1 | Chains: A
PROTEIN (ALPHA-AMYLASE) protein, length: 471 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 36703
95 % 3 4 24291 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 3 4 23548
70 % 3 4 19127
50 % 78 85 734
40 % 87 94 691
30 % 87 94 719
Entity #2 | Chains: B
PROTEIN (RAGI BIFUNCTIONAL INHIBITOR) protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 57174
95 % 2 3 29770 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 1.1
PDBFlex
90 % 2 3 28601
70 % 2 3 25833
50 % 4 6 11447
40 % 4 6 10759
30 % 4 6 9929

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures