Sequence Similarity Clusters for the Entities in PDB 1TKT

Entity #1 | Chains: A
Pol polyproteins [Reverse transcriptase], Chain A protein, length: 560 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 27 62 620
95 % 95 282 111 Flexibility: Medium
Max RMSD: 23.5, Avg RMSD: 3.7
PDBFlex
90 % 95 282 116
70 % 95 282 126
50 % 96 283 152
40 % 96 284 166
30 % 96 284 172
Entity #2 | Chains: B
Pol polyproteins [Reverse transcriptase], Chain B protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 24 58 781
95 % 91 276 116 Flexibility: Low
Max RMSD: 13.7, Avg RMSD: 1.5
PDBFlex
90 % 91 276 123
70 % 91 276 131
50 % 92 277 160
40 % 92 278 171
30 % 92 278 178

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures