Sequence Similarity Clusters for the Entities in PDB 1TJI

Entity #1 | Chains: L
anti-HIV-1 antibody 2F5 Light Chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 12269
95 % 5 41 1545 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.7
PDBFlex
90 % 5 41 1577
70 % 654 2262 2
50 % 833 2875 2
40 % 833 2875 2
30 % 1706 5831 1
Entity #2 | Chains: H
anti-HIV-1 antibody 2F5 Heavy Chain protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 24951
95 % 5 41 1550 Flexibility: Low
Max RMSD: 5.0, Avg RMSD: 0.8
PDBFlex
90 % 5 41 1585
70 % 810 2773 1
50 % 861 2914 1
40 % 861 2914 1
30 % 1707 5831 1
Entity #3 | Chains: P
Envelope Glycoprotein GP41 protein, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures