Sequence Similarity Clusters for the Entities in PDB 1T2Q

Entity #1 | Chains: L
Fab NNA7 Heavy Chain protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 87139
95 % 34 164 166 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 38 174 155
70 % 340 2399 2
50 % 427 3045 2
40 % 427 3045 2
30 % 877 6183 1
Entity #2 | Chains: H
Fab NNA7 Light Chain protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 43675
95 % 1 2 39165 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 2 16 3770
70 % 418 2943 1
50 % 444 3094 1
40 % 444 3094 1
30 % 878 6183 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures