Sequence Similarity Clusters for the Entities in PDB 1SVA

Entity #1 | Chains: 1,2,3,4,5,6
SIMIAN VIRUS 40 protein, length: 361 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 17430
95 % 1 1 16362 Flexibility: Medium
Max RMSD: 7.7, Avg RMSD: 5.4
PDBFlex
90 % 1 1 16088
70 % 1 4 3160
50 % 1 7 1658
40 % 1 7 1716
30 % 1 7 1741

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures