Sequence Similarity Clusters for the Entities in PDB 1SMO

Entity #1 | Chains: A,B
triggering receptor expressed on myeloid cells 1 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 37484
95 % 1 2 12979 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.6
PDBFlex
90 % 1 2 12859
70 % 1 2 12220
50 % 1 3 8993
40 % 1 3 8599
30 % 1 3 7989

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures