Sequence Similarity Clusters for the Entities in PDB 1SM1

Entity #1 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2880 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: C
50S RIBOSOMAL PROTEIN L4 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 29 1624
95 % 19 29 2134 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.2
PDBFlex
90 % 19 29 2171
70 % 19 29 2232
50 % 187 231 121
40 % 187 241 136
30 % 232 466 69
Entity #11 | Chains: D
50S RIBOSOMAL PROTEIN L5 protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 24 2019
95 % 17 24 2648 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.4
PDBFlex
90 % 17 24 2716
70 % 187 228 96
50 % 235 469 48
40 % 235 469 62
30 % 235 469 64
Entity #12 | Chains: E
50S RIBOSOMAL PROTEIN L6 protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 42836
95 % 2 2 37636 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 2 2 35948
70 % 2 2 31942
50 % 2 2 27850
40 % 2 2 25352
30 % 2 2 22554
Entity #13 | Chains: F
50S RIBOSOMAL PROTEIN L9 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 18912
95 % 3 5 18311 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 3 5 18149
70 % 3 5 16695
50 % 152 171 167
40 % 186 359 97
30 % 186 372 94
Entity #14 | Chains: G
50S RIBOSOMAL PROTEIN L11 protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 19 2686
95 % 14 21 2994 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 2.1
PDBFlex
90 % 14 21 3066
70 % 36 65 654
50 % 74 266 159
40 % 74 266 170
30 % 74 274 170
Entity #15 | Chains: H
50S RIBOSOMAL PROTEIN L13 protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 19 3487
95 % 15 19 4219 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.2
PDBFlex
90 % 15 19 4276
70 % 15 19 4256
50 % 15 19 4077
40 % 15 19 4112
30 % 15 19 4023
Entity #16 | Chains: I
50S RIBOSOMAL PROTEIN L14 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 24 2065
95 % 17 24 2681 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.8
PDBFlex
90 % 17 24 2743
70 % 184 225 99
50 % 229 487 36
40 % 229 487 47
30 % 229 487 50
Entity #17 | Chains: J
50S RIBOSOMAL PROTEIN L15 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 24 2095
95 % 17 24 2651 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 2.9
PDBFlex
90 % 17 24 2697
70 % 17 24 2736
50 % 17 24 2740
40 % 228 469 64
30 % 228 469 66
Entity #18 | Chains: K
50S RIBOSOMAL PROTEIN L16 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 24 2514
95 % 19 24 3296 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 2.7
PDBFlex
90 % 19 24 3186
70 % 186 229 97
50 % 230 472 47
40 % 230 472 59
30 % 230 472 62
Entity #19 | Chains: L
50S RIBOSOMAL PROTEIN L17 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 24 2053
95 % 17 24 2596 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.9
PDBFlex
90 % 17 24 2681
70 % 17 24 2681
50 % 222 432 55
40 % 229 471 52
30 % 229 473 54
Entity #2 | Chains: 1
50S RIBOSOMAL PROTEIN L33 protein, length: 82 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 6 17477
95 % 2 6 16132 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 2 6 15835
70 % 2 6 14867
50 % 2 6 13439
40 % 2 6 12530
30 % 2 6 11475
Entity #20 | Chains: M
50S RIBOSOMAL PROTEIN L18 protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 22 2246
95 % 17 24 2589 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.6
PDBFlex
90 % 17 24 2640
70 % 17 24 2690
50 % 220 454 54
40 % 220 435 73
30 % 220 435 78
Entity #21 | Chains: N
50S RIBOSOMAL PROTEIN L19 protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 19 3450
95 % 15 19 4226 Flexibility: Medium
Max RMSD: 7.0, Avg RMSD: 3.0
PDBFlex
90 % 15 19 4280
70 % 15 19 4264
50 % 15 19 4172
40 % 15 19 4118
30 % 15 19 4031
Entity #22 | Chains: O
50S RIBOSOMAL PROTEIN L20 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 28 1748
95 % 17 28 2259 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 17 28 2312
70 % 17 28 2378
50 % 229 474 42
40 % 229 482 49
30 % 229 482 51
Entity #23 | Chains: P
50S RIBOSOMAL PROTEIN L21 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 28 1712
95 % 17 28 2186 Flexibility: Medium
Max RMSD: 7.9, Avg RMSD: 3.7
PDBFlex
90 % 17 28 2243
70 % 17 28 2303
50 % 191 261 111
40 % 228 469 63
30 % 228 469 65
Entity #24 | Chains: Q
50S RIBOSOMAL PROTEIN L22 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 28 1745
95 % 20 30 2071 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.1
PDBFlex
90 % 20 30 2115
70 % 20 30 2154
50 % 20 30 2204
40 % 20 30 2240
30 % 20 30 2257
Entity #25 | Chains: R
50S RIBOSOMAL PROTEIN L23 protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 26 1815
95 % 18 26 2399 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.1
PDBFlex
90 % 18 26 2451
70 % 18 26 2510
50 % 185 228 123
40 % 229 471 61
30 % 229 471 63
Entity #26 | Chains: S
50S RIBOSOMAL PROTEIN L24 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 25 1943
95 % 17 25 2495 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.6
PDBFlex
90 % 17 25 2554
70 % 17 25 2601
50 % 17 25 2623
40 % 17 25 2648
30 % 17 25 2637
Entity #27 | Chains: T
GENERAL STRESS PROTEIN CTC protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 25 2378
95 % 16 25 3022 Flexibility: Low
Max RMSD: 6.5, Avg RMSD: 1.7
PDBFlex
90 % 16 25 3018
70 % 16 25 3065
50 % 16 25 3061
40 % 16 25 3057
30 % 16 25 3031
Entity #28 | Chains: U
50S RIBOSOMAL PROTEIN L27 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 29 1647
95 % 18 29 2117 Flexibility: Medium
Max RMSD: 11.9, Avg RMSD: 5.0
PDBFlex
90 % 18 29 2161
70 % 56 226 175
50 % 231 471 46
40 % 231 471 58
30 % 231 471 61
Entity #29 | Chains: W
50S RIBOSOMAL PROTEIN L29 protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 26 1869
95 % 18 26 2392 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.5
PDBFlex
90 % 18 26 2443
70 % 18 26 2502
50 % 18 26 2500
40 % 18 26 2553
30 % 217 426 81
Entity #3 | Chains: 2
50S RIBOSOMAL PROTEIN L34 protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 28 1671
95 % 17 28 2185 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.1
PDBFlex
90 % 17 28 2240
70 % 54 226 173
50 % 228 468 49
40 % 228 468 65
30 % 228 468 67
Entity #30 | Chains: X
50S RIBOSOMAL PROTEIN L30 protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 24 2029
95 % 17 24 2679 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.9
PDBFlex
90 % 17 24 2740
70 % 17 24 2765
50 % 61 256 179
40 % 229 464 66
30 % 229 464 68
Entity #31 | Chains: Y
50S RIBOSOMAL PROTEIN L31 protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 12 4468
95 % 3 12 5167 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 3 12 5221
70 % 3 12 5161
50 % 160 201 151
40 % 160 281 129
30 % 160 282 139
Entity #32 | Chains: Z
50S RIBOSOMAL PROTEIN L32 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 34 1351
95 % 20 34 1790 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.9
PDBFlex
90 % 20 34 1826
70 % 20 34 1867
50 % 182 230 125
40 % 182 230 143
30 % 226 457 72
Entity #4 | Chains: 3
50S RIBOSOMAL PROTEIN L35 protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 28 1729
95 % 17 28 2220 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 1.7
PDBFlex
90 % 17 28 2274
70 % 17 28 2334
50 % 185 230 122
40 % 185 240 138
30 % 185 240 145
Entity #5 | Chains: 4
50S RIBOSOMAL PROTEIN L36 protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 22 2196
95 % 11 22 2838 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.0
PDBFlex
90 % 11 22 2911
70 % 130 212 135
50 % 166 408 77
40 % 166 408 93
30 % 166 408 93
Entity #6 | Chains: 5
QUINUPRISTIN protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: 9
5S RIBOSOMAL RNA rna, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #8 | Chains: A
50S RIBOSOMAL PROTEIN L2 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 22 2217
95 % 17 24 2661 Flexibility: Low
Max RMSD: 7.5, Avg RMSD: 2.2
PDBFlex
90 % 17 24 2618
70 % 185 226 98
50 % 229 474 45
40 % 229 474 57
30 % 229 474 60
Entity #9 | Chains: B
50S RIBOSOMAL PROTEIN L3 protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 27 1776
95 % 17 27 2320 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 1.5
PDBFlex
90 % 17 27 2337
70 % 17 27 2409
50 % 235 480 44
40 % 235 484 53
30 % 235 485 56

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures