Sequence Similarity Clusters for the Entities in PDB 1S9Y

Entity #1 | Chains: A
HLA class I histocompatibility antigen, A-2 alpha chain protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 151 230 53
95 % 203 291 64 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 242 355 39
70 % 580 841 6
50 % 587 855 7
40 % 636 913 8
30 % 642 938 14
Entity #2 | Chains: B
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 532 749 2
95 % 565 798 2 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 576 816 4
70 % 748 1120 4
50 % 763 1145 3
40 % 763 1145 4
30 % 763 1145 10
Entity #3 | Chains: C
NY-ESO-1 peptide analogue S9S protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures