Sequence Similarity Clusters for the Entities in PDB 1RUT

Entity #1 | Chains: X
Fusion protein of Lmo4 protein and LIM domain-binding protein 1 protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 33937
95 % 1 2 28184 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.1
PDBFlex
90 % 1 2 27189
70 % 1 2 24690
50 % 1 3 11011
40 % 1 3 10371
30 % 1 3 9540

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1RUT 1 X Fusion protein of Lmo4 protein and LIM domain-binding protein 1 Fusion of LMO4 residues 16-152 to ldb1 LID residues 300-339 via a flexible linker with sequence GGSGGSGGSGG 10090
2 2DFY 1 C, X fusion protein of LIM domain transcription factor LMO4 and LIM domain-binding protein 1 Cyclised fusion of LMO4 residues 18-152 to LDB1 LID residues 300-339 via two flexible linkers with sequence GGSGGSGGSGG and TRESGSIEF LMO4 10090