Sequence Similarity Clusters for the Entities in PDB 1RFN

Entity #1 | Chains: A
PROTEIN (COAGULATION FACTOR IX) protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 19336
95 % 23 23 2906 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 23 23 2987
70 % 23 25 2794
50 % 23 25 2802
40 % 275 290 184
30 % 1818 1932 5
Entity #2 | Chains: B
PROTEIN (COAGULATION FACTOR IX) protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 22 2565
95 % 22 22 3190 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 0.8
PDBFlex
90 % 22 22 3265
70 % 22 22 3283
50 % 22 22 3240
40 % 22 22 3224
30 % 22 22 3164

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures