Sequence Similarity Clusters for the Entities in PDB 1REQ

Entity #1 | Chains: A,C
METHYLMALONYL-COA MUTASE protein, length: 727 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 7186
95 % 1 8 5577 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.1
PDBFlex
90 % 1 8 5627
70 % 3 10 4784
50 % 5 13 3547
40 % 5 13 3534
30 % 5 13 3467
Entity #2 | Chains: B,D
METHYLMALONYL-COA MUTASE protein, length: 637 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 8 4668
95 % 1 8 5334 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 1 8 5386
70 % 1 8 5359
50 % 1 8 5128
40 % 1 8 5030
30 % 3 10 4416

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures